Toggle navigation
Heath Lab @ ISU
Home
Research
People
Publications
Software
Resources
Links
Collaborators
Teaching
Workshops
Join the Heath Lab
Graduate Programs
Postdoc Opportunities
EEOB
ISU
Blog
Bayesian Methods for Estimating Divergence Times
Tutorials and Lectures for
workshops
on applied phylogenetics and molecular evolution
RevBayes
Tutorials
RevBayes Demo: the Birth-Death Process
(tree file and RevBayes scripts)
RevBayes: Comparing Relaxed-Clock Models & Estimating Time- Calibrated Phylogenies
BEAST2
Tutorials
BEAST 2: Dating Species Divergences with the Fossilized Birth-Death Process
BEAST 2: Estimating Epidemiological Parameters of an Ebola Outbreak
Software (please download and install)
RevBayes Downloads
revbayes.com
RevBayes for Windows
(fully packaged executable)
RevBayes for Mac OSX
(for 10.7 or greater; follow included install instructions)
RevBayes compile instructions for Linux
BEAST 2 Downloads
beast2.org
Additional Programs
Tracer
FigTree
R
Slides
Bayesian Divergence Time Estimation – Workshop Lecture
from
Tracy Heath
More Resources
Primer on Probability
by Ziheng Yang
Molecular Evolution: A Statistical Approach
(book) by Ziheng Yang (with 30% off
discount code
)
The Bayesian Kitchen
(excellent blog posts on Bayesian phylogenetics by Nicolas Lartillot)
MCMCRobot
a program for learning about MCMC by Paul Lewis
Workshop on Molecular Evolution at Woods Hole
(see
schedule
for links to tutorials and course resources)
Tree Thinkers Tutorials
(tutorials from the Bodega Applied Phylogenetics Workshop and other courses)
RevBayes Tutorials
Beast v2 Tutorials
Beast v1 Tutorials